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Velvet assembler

Velvet is an algorithm package that has been designed to deal with de novo genome assembly and short read sequencing alignments. This is achieved through the manipulation of de Bruijn graphs for genomic sequence assembly via the removal of errors and the simplification of repeated regions. Velvet has also been implemented in commercial packages, such as…

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Available in
C
Developers
Daniel Zerbino, Ewan Birney
License
GPL
Operating system
Unix-like
Release
2008
Stable release
1.2.10

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Algorithm

Motivation

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Map overview Semantic statistics

Velvet assembler

Nodes26
Edges25
Triples10
Avg. degree1.92
Density0.076923
Components1

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Velvet assembler

Top relations

related to Graphical interface · 2
Velvet assembler → One, Velvet
Available in · 1
Velvet assembler → C
Developers · 1
Velvet assembler → Daniel Zerbino, Ewan Birney
License · 1
Velvet assembler → GPL
Operating system · 1
Velvet assembler → Unix-like
Release · 1
Velvet assembler → 2008
Stable release · 1
Velvet assembler → 1.2.10
Type · 1
Velvet assembler → Bioinformatics
Website · 1
Velvet assembler → www.github.com/dzerbino/velvet/

Important terminology Word statistics

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Important terminology

velvet errors graph de reads read sequencing simplification short algorithm also bruijn repeats paths nodes assembly bubbles connections removal information

Entity relationships Subject–Predicate–Object triples

SubjectPredicateObjectConfidenceSrc
Velvet assemblerAvailable inC1.00infobox
Velvet assemblerDevelopersDaniel Zerbino, Ewan Birney1.00infobox
Velvet assemblerLicenseGPL1.00infobox
Velvet assemblerOperating systemUnix-like1.00infobox
Velvet assemblerRelease20081.00infobox
Velvet assemblerStable release1.2.101.00infobox
Velvet assemblerTypeBioinformatics1.00infobox
Velvet assemblerWebsitewww.github.com/dzerbino/velvet/1.00infobox
Velvet assemblerrelated to Graphical interfaceOne0.60section
Velvet assemblerrelated to Graphical interfaceVelvet0.60section

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