Smoldyn

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Features

Rule-based modeling Gillespie algorithm

2 related topics

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License: LGPL
Operating system: Linux, macOS and Windows
Original author: Steve Andrews
Release: July 1, 2003; 23 years ago (2003-07-01)
Repository: github.com/ssandrews/Smoldyn
Stable release: 2.71 / February 6, 2023; 3 years ago (2023-02-06)

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Features

Advanced semantic analysis

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Map overview Semantic statistics

Nodes4

Edges3

Triples56

Avg. degree1.5

Density0.5

Components1

How this topic connects Entity context

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Smoldyn

Top relations

related to Features · 21

Smoldyn → Accuracy, All, Because, BioNetGen, BNGL, C/C, Gillespie, It, Model, Models, Multi-scale, Python API, Python APIs, Real-time, Rule-based, Simulated, Smoldyn's, Tests, The, These

related to history · 15

Smoldyn → Adam Arkin, C/C, Computational Research Laboratories, Further, India, MITRE, NIH, NSF, Pune, Python APIs, Roger Brent, Simons Foundation, Steve Andrews, Upinder Bhalla, US DOE

related to Development team · 5

Smoldyn → Diliwar Singh, Martin Robinson, Nathan Addy, Other, Steve Andrews

related to GPU acceleration · 4

Smoldyn → CPU, GPUs, However, They

related to External links · 2

Smoldyn → GitHub, Official

License · 1

Smoldyn → LGPL

Operating system · 1

Smoldyn → Linux, macOS and Windows

Original author · 1

Smoldyn → Steve Andrews

Release · 1

Smoldyn → July 1, 2003; 23 years ago (2003-07-01)

Repository · 1

Smoldyn → github.com/ssandrews/Smoldyn

Important terminology Word statistics

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Important terminology

simulation surfaces software development chemical reactions diffusion interactions supports biology spatial simulated molecules systems biochemical python features also steve andrews

Entity relationships Subject–Predicate–Object triples

Subject	Predicate	Object	Confidence	Src
Smoldyn	License	LGPL	1.00	infobox
Smoldyn	Operating system	Linux, macOS and Windows	1.00	infobox
Smoldyn	Original author	Steve Andrews	1.00	infobox
Smoldyn	Release	July 1, 2003; 23 years ago (2003-07-01)	1.00	infobox
Smoldyn	Repository	github.com/ssandrews/Smoldyn	1.00	infobox
Smoldyn	Stable release	2.71 / February 6, 2023; 3 years ago (2023-02-06)	1.00	infobox
Smoldyn	Type	Simulation software	1.00	infobox
Smoldyn	Website	www.smoldyn.org	1.00	infobox
Smoldyn	Written in	C, C++, Python	1.00	infobox
Smoldyn	related to Development team	Steve Andrews	0.60	section
Smoldyn	related to Development team	Other	0.60	section
Smoldyn	related to Development team	Nathan Addy	0.60	section

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