Rubredoxin

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Rubredoxin topic overview

The analysis highlights Structure, Electron transfer rate and Protein mechanism and effects as prominent areas in the source structure around Rubredoxin.

Related topics: 23
Source areas: 5
Connected nodes: 28
Extracted relationships: 27
Related term clusters: 15
Bridge connections: 28

What this topic covers Research coverage

Source areas are shown by the number of related topics found in each part of the analysis. Use smaller areas too: they can reveal specialized angles and content gaps.

Overview · 9 topics

Structure · 9 topics

Electron transfer rate · 2 topics

Protein mechanism and effects · 2 topics

Rubredoxin in some biochemical reactions · 1 topics

Smaller areas are not necessarily less important. They contain fewer connections in this analysis and can be useful for finding specialized angles or coverage gaps.

Key facts & relationships

High-confidence facts extracted from structured source data. Use them as anchors for further research.

AlphaFold: IPR004039 · PF00301
Available protein structures:: IPR004039 · PF00301
InterPro: IPR004039
PDB: IPR004039 PF00301 (ECOD; PDBsum)
Pfam: PF00301
Pfam clan: CL0045

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Explore different angles and find fresh ideas to shape your next piece of content.

Rubredoxin

9Iron · Bacteria · Archaea

14Α-helices · Β-strand · Cysteine

Explore all related topics Closing gaps

Browse the complete topic structure, not only the most central items. Less prominent entities and concepts can reveal missing angles, specialized context and useful research gaps. Each item opens a new analysis centered on that subject.

Overview

Structure

Rubredoxin in some biochemical reactions

Enzyme Commission number

Electron transfer rate

Protein mechanism and effects

For the semantics nerds

You can skip this section if you’re here for content ideas and keyword inspiration.

Advanced semantic analysis

How Rubredoxin connects Entity context

The extracted context around Rubredoxin shows recurring relationship patterns in the source. For example, Rubredoxin → Cys, Fe-S, Fe2, Fe3, Leu41, NH H-bonding, S-Cys, Upon Another extracted example is Rubredoxin → EC1, H2O2EC1, H2OEC1, NAD, NADH, O2. Use these groups to spot repeated connection types before inspecting the individual relationships.

Top relations

has effect · 8

Rubredoxin → Cys, Fe-S, Fe2, Fe3, Leu41, NH H-bonding, S-Cys, Upon

related to Rubredoxin in some biochemical reactions · 6

Rubredoxin → EC1, H2O2EC1, H2OEC1, NAD, NADH, O2

AlphaFold · 2

Rubredoxin → IPR004039, PF00301

Available protein structures: · 2

Rubredoxin → IPR004039, PF00301

related to Structure · 2

Rubredoxin → Fe1S0, Rubredoxins

InterPro · 1

Rubredoxin → IPR004039

PDB · 1

Rubredoxin → IPR004039 PF00301 (ECOD; PDBsum)

Pfam · 1

Rubredoxin → PF00301

Pfam clan · 1

Rubredoxin → CL0045

PROSITE · 1

Rubredoxin → PDOC00179

Important terminology

Use these terms to understand the vocabulary surrounding the topic, not as a checklist for keyword stuffing.

Important terminology

rubredoxins state fe2 electron transfer oxidation proteins reduced fe3 leu41 cys water protein structure bacteria iron changes reduction conformation iron-sulfur

Rubredoxin relationships Subject–Predicate–Object triples

TTTA extracted 27 structured relationships around Rubredoxin. Examples in this analysis include Rubredoxin → AlphaFold → IPR004039 and Rubredoxin → AlphaFold → PF00301. The table shows each extracted connection, where it came from and its confidence.

Subject	Predicate	Object	Confidence	Src
Rubredoxin	AlphaFold	IPR004039	1.00	infobox
Rubredoxin	AlphaFold	PF00301	1.00	infobox
Rubredoxin	Available protein structures:	IPR004039	1.00	infobox
Rubredoxin	Available protein structures:	PF00301	1.00	infobox
Rubredoxin	InterPro	IPR004039	1.00	infobox
Rubredoxin	PDB	IPR004039 PF00301 (ECOD; PDBsum)	1.00	infobox
Rubredoxin	Pfam	PF00301	1.00	infobox
Rubredoxin	Pfam clan	CL0045	1.00	infobox
Rubredoxin	PROSITE	PDOC00179	1.00	infobox
Rubredoxin	SCOP2	7rxn / SCOPe / SUPFAM	1.00	infobox
Rubredoxin	Symbol	Rubredoxin	1.00	infobox
Rubredoxin	has effect	Fe3	0.60	section

Related concept clusters Related term clusters

The concept neighborhoods around Rubredoxin bring nearby vocabulary together. In this analysis, examples include Structure, Transfer and Pdb. Use the clusters to find adjacent concepts and terminology that may deserve separate research.

Rubredoxin
- Structure
- Transfer
- Pdb
- Mechanism
- Protein
- Rate
- Reduction
- Reduced
- Leu41
- Rubredoxins
- Fe2
- Energy
rubredoxin
- Structure
- Transfer
- Pdb
- Mechanism
- Protein
- Rate
- Reduction
- Reduced
- Leu41
- Rubredoxins
- Fe2
- Energy
rubredoxin a
- Structure
- Transfer
- Pdb
- Mechanism
- Protein
- Rate
- Reduction
- Reduced
- Leu41
- Rubredoxins
- Fe2
- Energy
rubredoxin in some biochemical reactions
- Structure
- Transfer
- Pdb
- Mechanism
- Protein
- Rate
- Reduction
- Reduced
- Leu41
- Rubredoxins
- Fe2
- Energy
electron transfer
- Electron
- Transfer
- Energy
- Rate
- Reduced
- Rubredoxin
- Rubredoxins
- Mechanism
- Oxidized
- Protein
- Changes
- Structure
electron transfer rate
- Electron
- Transfer
- Energy
- Rate
- Reduced
- Rubredoxin
- Rubredoxins
- Mechanism
- Oxidized
- Pdb
- Protein
- Changes
protein mechanism and effects
- Pdb
- Structure
- Transfer
- Charge
- Energy
- Fe2
- Mechanism
- Oxidized
- Protein
- Rate
- Redox
- Rubredoxin
x-ray structure
- Pdb
- Protein
- Reduced
- Transfer
- Fe2
- Chain
- Closed
- Energy
- H-bonding
- Mechanism
- Open
- Rate

Connections between topic areas Semantic bridges

For Rubredoxin, one of the stronger structural bridges in this analysis connects Rubredoxin with Overview. Bridges highlight paths between different parts of the map and can reveal research angles that are easy to miss in a flat list.

Min side: 3

Rubredoxin — Overview · splits 19 ⟂ 10

Rubredoxin — Structure · splits 19 ⟂ 10

Rubredoxin — Electron transfer rate · splits 26 ⟂ 3

Rubredoxin — Protein mechanism and effects · splits 26 ⟂ 3

Map overview Semantic statistics

Rubredoxin

Nodes29

Edges28

Triples27

Avg. degree1.93

Density0.068966

Components1

Source & methodology

TTTA analyzes the structure around Rubredoxin to surface related topics, entities, relationships, concept neighborhoods and bridge connections. Use the map to explore areas such as Structure, Electron transfer rate & Protein mechanism and effects, including less central topics that may reveal useful research gaps. Automatically extracted connections are research leads rather than rewritten encyclopedia content.

Source: Wikipedia — Rubredoxin · EN edition · Analysis: TopicsToTalkAbout

Rubredoxin: Structure, Electron transfer rate & Protein mechanism and effects

Rubredoxin topic overview

What this topic covers Research coverage

Key facts & relationships

Start with your topic. Discover where to go next.

Questions to explore

Explore all related topics Closing gaps

Overview

Structure

Rubredoxin in some biochemical reactions

Electron transfer rate

Protein mechanism and effects

For the semantics nerds

Advanced semantic analysis

How Rubredoxin connects Entity context

Rubredoxin

Top relations

Important terminology

Important terminology

Rubredoxin relationships Subject–Predicate–Object triples

Related concept clusters Related term clusters

Connections between topic areas Semantic bridges

Map overview Semantic statistics

Rubredoxin

Source & methodology