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Rubredoxin: Structure, Electron transfer rate & Protein mechanism and effects

Rubredoxins are a class of low-molecular-weight iron-containing proteins found in sulfur-metabolizing bacteria and archaea. Sometimes rubredoxins are classified as iron-sulfur proteins; however, in contrast to iron-sulfur proteins, rubredoxins do not contain inorganic sulfide. Like cytochromes, ferredoxins and Rieske proteins, rubredoxins are thought to…

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Rubredoxin topic overview

The analysis highlights Structure, Electron transfer rate and Protein mechanism and effects as prominent areas in the source structure around Rubredoxin.

Related topics
23
Source areas
5
Connected nodes
28
Extracted relationships
39
Concept neighborhoods
15
Bridge connections
28

What this topic covers Research coverage

Source areas are shown by the number of related topics found in each part of the analysis. Use smaller areas too: they can reveal specialized angles and content gaps.

Overview · 9 topics
Structure · 9 topics
Electron transfer rate · 2 topics
Protein mechanism and effects · 2 topics
Rubredoxin in some biochemical reactions · 1 topics

Smaller areas are not necessarily less important. They contain fewer connections in this analysis and can be useful for finding specialized angles or coverage gaps.

Key facts & relationships

High-confidence facts extracted from structured source data. Use them as anchors for further research.

AlphaFold
IPR004039 · PF00301
Available protein structures:
IPR004039 · PF00301
InterPro
IPR004039
PDB
IPR004039 PF00301 (ECOD; PDBsum)
Pfam
PF00301
Pfam clan
CL0045

Explore all related topics Closing gaps

Browse the complete topic structure, not only the most central items. Less prominent entities and concepts can reveal missing angles, specialized context and useful research gaps. Each item opens a new analysis centered on that subject.

Overview

Structure

Rubredoxin in some biochemical reactions

  • EC Enzyme Commission number

Electron transfer rate

Protein mechanism and effects

Advanced semantic analysis

Deeper signals for content research, entity SEO and topical coverage. The plain-language headings explain what each technical view is useful for.

How Rubredoxin connects Entity context

The extracted context around Rubredoxin shows recurring relationship patterns in the source. For example, Rubredoxin → Cys, Fe-S, Fe2, Fe3, Leu41, NH H-bonding, S-Cys, The, Upon Another extracted example is Rubredoxin → Clostridium, InterPro, IPR001052, Neutron, PDB, Pyrococcus, X-ray. Use these groups to spot repeated connection types before inspecting the individual relationships.

Rubredoxin

Top relations

has effect · 9
Rubredoxin → Cys, Fe-S, Fe2, Fe3, Leu41, NH H-bonding, S-Cys, The, Upon
related to External links · 7
Rubredoxin → Clostridium, InterPro, IPR001052, Neutron, PDB, Pyrococcus, X-ray
related to Rubredoxin in some biochemical reactions · 6
Rubredoxin → EC1, H2O2EC1, H2OEC1, NAD, NADH, O2
related to Structure · 6
Rubredoxin → Fe1S0, In, Rubredoxins, The, This, While
AlphaFold · 2
Rubredoxin → IPR004039, PF00301
Available protein structures: · 2
Rubredoxin → IPR004039, PF00301
InterPro · 1
Rubredoxin → IPR004039
PDB · 1
Rubredoxin → IPR004039 PF00301 (ECOD; PDBsum)
Pfam · 1
Rubredoxin → PF00301
Pfam clan · 1
Rubredoxin → CL0045

Important terminology

Use these terms to understand the vocabulary surrounding the topic, not as a checklist for keyword stuffing.

Important terminology

rubredoxins state fe2 electron transfer oxidation proteins reduced fe3 leu41 cys water protein structure bacteria iron changes reduction conformation iron-sulfur

Rubredoxin relationships Subject–Predicate–Object triples

TTTA extracted 39 structured relationships around Rubredoxin. Examples in this analysis include Rubredoxin → AlphaFold → IPR004039 and Rubredoxin → AlphaFold → PF00301. The table shows each extracted connection, where it came from and its confidence.

SubjectPredicateObjectConfidenceSrc
RubredoxinAlphaFoldIPR0040391.00infobox
RubredoxinAlphaFoldPF003011.00infobox
RubredoxinAvailable protein structures:IPR0040391.00infobox
RubredoxinAvailable protein structures:PF003011.00infobox
RubredoxinInterProIPR0040391.00infobox
RubredoxinPDBIPR004039 PF00301 (ECOD; PDBsum)1.00infobox
RubredoxinPfamPF003011.00infobox
RubredoxinPfam clanCL00451.00infobox
RubredoxinPROSITEPDOC001791.00infobox
RubredoxinSCOP27rxn / SCOPe / SUPFAM1.00infobox
RubredoxinSymbolRubredoxin1.00infobox
Rubredoxinhas effectThe0.60section

Related concept clusters Concept neighborhoods

The concept neighborhoods around Rubredoxin bring nearby vocabulary together. In this analysis, examples include Structure, Transfer and Pdb. Use the clusters to find adjacent concepts and terminology that may deserve separate research.

  • Rubredoxin
    • Structure
    • Transfer
    • Pdb
    • Mechanism
    • Protein
    • Rate
    • Reduction
    • Reduced
    • Leu41
    • Rubredoxins
    • Fe2
    • Energy
  • rubredoxin
    • Structure
    • Transfer
    • Pdb
    • Mechanism
    • Protein
    • Rate
    • Reduction
    • Reduced
    • Leu41
    • Rubredoxins
    • Fe2
    • Energy
  • rubredoxin a
    • Structure
    • Transfer
    • Pdb
    • Mechanism
    • Protein
    • Rate
    • Reduction
    • Reduced
    • Leu41
    • Rubredoxins
    • Fe2
    • Energy
  • rubredoxin in some biochemical reactions
    • Structure
    • Transfer
    • Pdb
    • Mechanism
    • Protein
    • Rate
    • Reduction
    • Reduced
    • Leu41
    • Rubredoxins
    • Fe2
    • Energy
  • electron transfer
    • Electron
    • Transfer
    • Energy
    • Rate
    • Reduced
    • Rubredoxin
    • Rubredoxins
    • Mechanism
    • Oxidized
    • Protein
    • Changes
    • Structure
  • electron transfer rate
    • Electron
    • Transfer
    • Energy
    • Rate
    • Reduced
    • Rubredoxin
    • Rubredoxins
    • Mechanism
    • Oxidized
    • Pdb
    • Protein
    • Changes
  • protein mechanism and effects
    • Pdb
    • Structure
    • Transfer
    • Charge
    • Energy
    • Fe2
    • Mechanism
    • Oxidized
    • Protein
    • Rate
    • Redox
    • Rubredoxin
  • x-ray structure
    • Pdb
    • Protein
    • Reduced
    • Transfer
    • Fe2
    • Chain
    • Closed
    • Energy
    • H-bonding
    • Mechanism
    • Open
    • Rate

Connections between topic areas Semantic bridges

For Rubredoxin, one of the stronger structural bridges in this analysis connects Rubredoxin with Overview. Bridges highlight paths between different parts of the map and can reveal research angles that are easy to miss in a flat list.

Min side: 3
Rubredoxin — Overview · splits 19 ⟂ 10
Rubredoxin — Structure · splits 19 ⟂ 10
Rubredoxin — Electron transfer rate · splits 26 ⟂ 3
Rubredoxin — Protein mechanism and effects · splits 26 ⟂ 3

Map overview Semantic statistics

Rubredoxin

Nodes29
Edges28
Triples39
Avg. degree1.93
Density0.068966
Components1

Source & methodology

TTTA analyzes the structure around Rubredoxin to surface related topics, entities, relationships, concept neighborhoods and bridge connections. Use the map to explore areas such as Structure, Electron transfer rate & Protein mechanism and effects, including less central topics that may reveal useful research gaps. Automatically extracted connections are research leads rather than rewritten encyclopedia content.

Source: Wikipedia — Rubredoxin · EN edition · Analysis: TopicsToTalkAbout

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