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ProBiS is a computer software which allows prediction of binding sites and their corresponding ligands for a given protein structure. Initially ProBiS was developed as a ProBiS algorithm by Janez Konc and Dušanka Janežič in 2010 and is now available as ProBiS server, ProBiS CHARMMing server, ProBiS algorithm and ProBiS plugin. The name ProBiS originates…
The analysis highlights Description and Overview as prominent areas in the source structure around ProBiS.
Source areas are shown by the number of related topics found in each part of the analysis. Use smaller areas too: they can reveal specialized angles and content gaps.
Smaller areas are not necessarily less important. They contain fewer connections in this analysis and can be useful for finding specialized angles or coverage gaps.
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The extracted context around ProBiS shows recurring relationship patterns in the source. For example, ProBiS → August, Binding Sites, December, Fast Parallel Algorithm, February, Ligands, Local Pairwise Alignments, Local Structural Comparison, March, Optimization, Parallel-ProBiS, Pdb Structures, Precalculated Binding Site Similarities, Prediction, ProBiS-Charmming, ProBiS-Database, ProBiS-ligands, Protein Binding Sites, Protein Structures, Web Another extracted example is ProBiS → Additionally, CHARMMing, Health, National Institutes, Otherwise, ProBiS CHARMMing, ProBiS PyMOL, ProBiS UCSF Chimera, Protein Data Bank, The ProBiS, The ProBiS CHARMMing, USA. Use these groups to spot repeated connection types before inspecting the individual relationships.
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sites protein server binding algorithm charmming ligands software prediction structure plugin 2010 corresponding given local fast allows available database national
TTTA extracted 40 structured relationships around ProBiS. Examples in this analysis include ProBiS → Developer → Insilab (National Institute of Chemistry Slovenia) and ProBiS → Operating system → Unix-like, Windows. The table shows each extracted connection, where it came from and its confidence.
| Subject | Predicate | Object | Confidence | Src |
|---|---|---|---|---|
| ProBiS | Developer | Insilab (National Institute of Chemistry Slovenia) | 1.00 | infobox |
| ProBiS | Operating system | Unix-like, Windows | 1.00 | infobox |
| ProBiS | Release | 2010; 16 years ago (2010) | 1.00 | infobox |
| ProBiS | Type | Web server, plugin, algorithm, database | 1.00 | infobox |
| ProBiS | Website | probis.cmm.ki.si | 1.00 | infobox |
| ProBiS | Written in | C++, JavaScript, PHP | 1.00 | infobox |
| ProBiS | is a | computer software which allows prediction of binding sites and their corresponding ligands for a given protein structure | 0.90 | text |
| ProBiS | related to Description | The ProBiS | 0.60 | section |
| ProBiS | related to Description | ProBiS CHARMMing | 0.60 | section |
| ProBiS | related to Description | CHARMMing | 0.60 | section |
| ProBiS | related to Description | The ProBiS CHARMMing | 0.60 | section |
| ProBiS | related to Description | National Institutes | 0.60 | section |
The concept neighborhoods around ProBiS bring nearby vocabulary together. In this analysis, examples include Server, Protein and Sites. Use the clusters to find adjacent concepts and terminology that may deserve separate research.
For ProBiS, one of the stronger structural bridges in this analysis connects ProBiS with Description. Bridges highlight paths between different parts of the map and can reveal research angles that are easy to miss in a flat list.
TTTA analyzes the structure around ProBiS to surface related topics, entities, relationships, concept neighborhoods and bridge connections. Use the map to explore areas such as Description & Overview, including less central topics that may reveal useful research gaps. Automatically extracted connections are research leads rather than rewritten encyclopedia content.
Source: Wikipedia — ProBiS · EN edition · Analysis: TopicsToTalkAbout