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ProBiS: Description & Overview

ProBiS is a computer software which allows prediction of binding sites and their corresponding ligands for a given protein structure. Initially ProBiS was developed as a ProBiS algorithm by Janez Konc and Dušanka Janežič in 2010 and is now available as ProBiS server, ProBiS CHARMMing server, ProBiS algorithm and ProBiS plugin. The name ProBiS originates…

Language: English [EN]
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ProBiS topic overview

The analysis highlights Description and Overview as prominent areas in the source structure around ProBiS.

Related topics
6
Source areas
2
Connected nodes
8
Extracted relationships
40
Related term clusters
6
Bridge connections
8

What this topic covers Research coverage

Source areas are shown by the number of related topics found in each part of the analysis. Use smaller areas too: they can reveal specialized angles and content gaps.

Description · 5 topics
Overview · 1 topics

Smaller areas are not necessarily less important. They contain fewer connections in this analysis and can be useful for finding specialized angles or coverage gaps.

Key facts & relationships

High-confidence facts extracted from structured source data. Use them as anchors for further research.

Developer
Insilab (National Institute of Chemistry Slovenia)
Operating system
Unix-like, Windows
Release
2010; 16 years ago (2010)
Type
Web server, plugin, algorithm, database
Written in
C++, JavaScript, PHP

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ProBiS

Explore all related topics Closing gaps

Browse the complete topic structure, not only the most central items. Less prominent entities and concepts can reveal missing angles, specialized context and useful research gaps. Each item opens a new analysis centered on that subject.

Overview

Description

For the semantics nerds

You can skip this section if you’re here for content ideas and keyword inspiration.

Advanced semantic analysis

How ProBiS connects Entity context

The extracted context around ProBiS shows recurring relationship patterns in the source. For example, ProBiS → August, Binding Sites, December, Fast Parallel Algorithm, February, Ligands, Local Pairwise Alignments, Local Structural Comparison, March, Optimization, Parallel-ProBiS, Pdb Structures, Precalculated Binding Site Similarities, Prediction, ProBiS-Charmming, ProBiS-Database, ProBiS-ligands, Protein Binding Sites, Protein Structures, Web Another extracted example is ProBiS → Additionally, CHARMMing, Health, National Institutes, Otherwise, ProBiS CHARMMing, ProBiS PyMOL, ProBiS UCSF Chimera, Protein Data Bank, The ProBiS, The ProBiS CHARMMing, USA. Use these groups to spot repeated connection types before inspecting the individual relationships.

ProBiS

Top relations

related to history · 21
ProBiS → August, Binding Sites, December, Fast Parallel Algorithm, February, Ligands, Local Pairwise Alignments, Local Structural Comparison, March, Optimization, Parallel-ProBiS, Pdb Structures, Precalculated Binding Site Similarities, Prediction, ProBiS-Charmming, ProBiS-Database, ProBiS-ligands, Protein Binding Sites, Protein Structures, Web
related to Description · 12
ProBiS → Additionally, CHARMMing, Health, National Institutes, Otherwise, ProBiS CHARMMing, ProBiS PyMOL, ProBiS UCSF Chimera, Protein Data Bank, The ProBiS, The ProBiS CHARMMing, USA
Developer · 1
ProBiS → Insilab (National Institute of Chemistry Slovenia)
Operating system · 1
ProBiS → Unix-like, Windows
Release · 1
ProBiS → 2010; 16 years ago (2010)
Type · 1
ProBiS → Web server, plugin, algorithm, database
Website · 1
ProBiS → probis.cmm.ki.si
Written in · 1
ProBiS → C++, JavaScript, PHP
is a · 1
ProBiS → computer software which allows prediction of binding sites and their corresponding ligands for a given protein structure

Important terminology

Use these terms to understand the vocabulary surrounding the topic, not as a checklist for keyword stuffing.

Important terminology

sites protein server binding algorithm charmming ligands software prediction structure plugin 2010 corresponding given local fast allows available database national

ProBiS relationships Subject–Predicate–Object triples

TTTA extracted 40 structured relationships around ProBiS. Examples in this analysis include ProBiS → Developer → Insilab (National Institute of Chemistry Slovenia) and ProBiS → Operating system → Unix-like, Windows. The table shows each extracted connection, where it came from and its confidence.

SubjectPredicateObjectConfidenceSrc
ProBiSDeveloperInsilab (National Institute of Chemistry Slovenia)1.00infobox
ProBiSOperating systemUnix-like, Windows1.00infobox
ProBiSRelease2010; 16 years ago (2010)1.00infobox
ProBiSTypeWeb server, plugin, algorithm, database1.00infobox
ProBiSWebsiteprobis.cmm.ki.si1.00infobox
ProBiSWritten inC++, JavaScript, PHP1.00infobox
ProBiSis acomputer software which allows prediction of binding sites and their corresponding ligands for a given protein structure0.90text
ProBiSrelated to DescriptionThe ProBiS0.60section
ProBiSrelated to DescriptionProBiS CHARMMing0.60section
ProBiSrelated to DescriptionCHARMMing0.60section
ProBiSrelated to DescriptionThe ProBiS CHARMMing0.60section
ProBiSrelated to DescriptionNational Institutes0.60section

Related concept clusters Related term clusters

The concept neighborhoods around ProBiS bring nearby vocabulary together. In this analysis, examples include Server, Protein and Sites. Use the clusters to find adjacent concepts and terminology that may deserve separate research.

  • ProBiS
    • Server
    • Protein
    • Sites
    • Algorithm
    • Charmming
    • Binding
    • Local
    • Plugin
    • Software
    • Structure
    • Ligands
    • Prediction
  • probis
    • Server
    • Protein
    • Sites
    • Algorithm
    • Charmming
    • Binding
    • Local
    • Plugin
    • Software
    • Structure
    • Ligands
    • Prediction
  • fast maximum clique algorithm
    • Local
    • Proteins
    • Similar
    • Site
    • Structurally
    • Web
    • Server
    • Alignment
    • Alignments
    • Detects
    • Structural
    • Protein
  • charmming
    • Servers
    • Server
    • Probis
    • Developed
    • Dušanka
    • Initially
    • Janez
    • Janežič
    • Konc
    • Now
    • National
    • Optimization
  • national institutes of health
    • Alignment
    • Database
    • Detects
    • Similar
    • Structurally
    • Web
    • Server
    • Fast
    • Local
    • Plugin
    • Software
    • Structure
  • software
    • Structure
    • Alignment
    • Database
    • Detects
    • National
    • Similar
    • Structurally
    • Web
    • Fast
    • Local
    • Plugin
    • Algorithm

Connections between topic areas Semantic bridges

For ProBiS, one of the stronger structural bridges in this analysis connects ProBiS with Description. Bridges highlight paths between different parts of the map and can reveal research angles that are easy to miss in a flat list.

Min side: 3
ProBiS — Description · splits 3 ⟂ 6

Map overview Semantic statistics

ProBiS

Nodes9
Edges8
Triples40
Avg. degree1.78
Density0.222222
Components1

Source & methodology

TTTA analyzes the structure around ProBiS to surface related topics, entities, relationships, concept neighborhoods and bridge connections. Use the map to explore areas such as Description & Overview, including less central topics that may reveal useful research gaps. Automatically extracted connections are research leads rather than rewritten encyclopedia content.

Source: Wikipedia — ProBiS · EN edition · Analysis: TopicsToTalkAbout

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