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PomBase: Community & Products

PomBase is a model organism database that provides online access to the fission yeast Schizosaccharomyces pombe genome sequence and annotated features, together with a wide range of manually curated functional gene-specific data. The PomBase website was redeveloped in 2016 to provide users with a more fully integrated, better-performing service…

Language: English [EN]
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PomBase topic overview

The analysis highlights Community and Products as prominent areas in the source structure around PomBase.

Related topics
15
Source areas
6
Connected nodes
21
Extracted relationships
31
Concept neighborhoods
16
Bridge connections
21

What this topic covers Research coverage

Source areas are shown by the number of related topics found in each part of the analysis. Use smaller areas too: they can reveal specialized angles and content gaps.

Data Curation and Quality Control · 4 topics
Overview · 4 topics
Data Organization · 3 topics
Documentation · 2 topics
Community co-Curation · 1 topics
Knowledgebase Updates · 1 topics

Smaller areas are not necessarily less important. They contain fewer connections in this analysis and can be useful for finding specialized angles or coverage gaps.

Key facts & relationships

High-confidence facts extracted from structured source data. Use them as anchors for further research.

Authors
Antonia Lock, Midori A Harris, Manuel Lera-Ramírez, Pascal Carme, Kim Rutherford, Juan Mata, Jürg Bähler, Steve Oliver, Valerie Wood
Bookmarkable entities
Yes
Curation policy
Professionally and community curated
Data types captured
Molecular Function, Biological Process, Cellular Component, Phenotype, Genotype, Allele, Protein Modification, Gene Expression, Protein expression, Nucleotide Sequence, RNA sequ…
Description
The scientific resource for Schizosaccharomyces pombe
Download URL
Downloads

Explore all related topics Closing gaps

Browse the complete topic structure, not only the most central items. Less prominent entities and concepts can reveal missing angles, specialized context and useful research gaps. Each item opens a new analysis centered on that subject.

Overview

Data Curation and Quality Control

Data Organization

Community co-Curation

  • Canto Canto (gene curation tool)

Knowledgebase Updates

Documentation

Advanced semantic analysis

Deeper signals for content research, entity SEO and topical coverage. The plain-language headings explain what each technical view is useful for.

How PomBase connects Entity context

The extracted context around PomBase shows recurring relationship patterns in the source. For example, PomBase → Developments, Eukaryotic Genomic Databases, FAQ, For, Methods, NAR Database Issue, Protocols, Usage Another extracted example is PomBase → Remarkably, The, The GO, To. Use these groups to spot repeated connection types before inspecting the individual relationships.

PomBase

Top relations

related to Documentation · 8
PomBase → Developments, Eukaryotic Genomic Databases, FAQ, For, Methods, NAR Database Issue, Protocols, Usage
related to Gene Characterization Status · 4
PomBase → Remarkably, The, The GO, To
related to Community co-Curation · 3
PomBase → Canto, Community, To
related to Knowledgebase Updates · 2
PomBase → News, Nucleic Acids Research
Authors · 1
PomBase → Antonia Lock, Midori A Harris, Manuel Lera-Ramírez, Pascal Carme, Kim Rutherford, Juan Mata, Jürg Bähler, Steve Oliver, Valerie Wood
Bookmarkable entities · 1
PomBase → Yes
Curation policy · 1
PomBase → Professionally and community curated
Data types captured · 1
PomBase → Molecular Function, Biological Process, Cellular Component, Phenotype, Genotype, Allele, Protein Modification, Gene Expression, Protein expression, Nucleotide Sequence, RNA sequ…
Description · 1
PomBase → The scientific resource for Schizosaccharomyces pombe
Download URL · 1
PomBase → Downloads

Important terminology

Use these terms to understand the vocabulary surrounding the topic, not as a checklist for keyword stuffing.

Important terminology

yeast data fission curated genome gene community research pombe sequence features curation genes manually protein human biological annotations proteins organism

PomBase relationships Subject–Predicate–Object triples

TTTA extracted 31 structured relationships around PomBase. Examples in this analysis include PomBase → Authors → Antonia Lock, Midori A Harris, Manuel Lera-Ramírez, Pascal Carme, Kim Rutherford, Juan Mata, Jürg Bähler, Steve Oliver, Valerie Wood and PomBase → Bookmarkable entities → Yes. The table shows each extracted connection, where it came from and its confidence.

SubjectPredicateObjectConfidenceSrc
PomBaseAuthorsAntonia Lock, Midori A Harris, Manuel Lera-Ramírez, Pascal Carme, Kim Rutherford, Juan Mata, Jürg Bähler, Steve Oliver, Valerie Wood1.00infobox
PomBaseBookmarkable entitiesYes1.00infobox
PomBaseCuration policyProfessionally and community curated1.00infobox
PomBaseData types capturedMolecular Function, Biological Process, Cellular Component, Phenotype, Genotype, Allele, Protein Modification, Gene Expression, Protein expression, Nucleotide Sequence, RNA sequ…1.00infobox
PomBaseDescriptionThe scientific resource for Schizosaccharomyces pombe1.00infobox
PomBaseDownload URLDownloads1.00infobox
PomBaseLicenseCreative Commons Attribution 4.0 International license, GNU General Public License, MIT License1.00infobox
PomBaseOrganismsSchizosaccharomyces pombe1.00infobox
PomBasePrimary citationCarme, et al (2026)1.00infobox
PomBaseRelease date20111.00infobox
PomBaseResearch centerUniversity of Cambridge and University College London1.00infobox
PomBaseWebsitepombase.org1.00infobox
PomBaseis amodel organism database that provides online access to the fission yeast Schizosaccharomyces pombe genome sequence and annotated features0.90text

Related concept clusters Concept neighborhoods

The concept neighborhoods around PomBase bring nearby vocabulary together. In this analysis, examples include Fission, Yeast and Community. Use the clusters to find adjacent concepts and terminology that may deserve separate research.

  • PomBase
    • Fission
    • Yeast
    • Community
    • Research
    • Curation
    • Features
    • Gene-specific
    • Genome
    • Pombe
    • Provides
    • Sequence
    • Using
  • pombase
    • Fission
    • Yeast
    • Community
    • Research
    • Curation
    • Features
    • Gene-specific
    • Genome
    • Pombe
    • Provides
    • Sequence
    • Using
  • model organism database
    • Pombe
    • Data
    • Functional
    • Organism
    • Schizosaccharomyces
    • Wide
    • Curated
    • Features
    • Gene-specific
    • Genome
    • Manually
    • Provides
  • fission yeast
    • Fission
    • Yeast
    • Features
    • Gene-specific
    • Sequence
    • Genes
    • Uncharacterized
    • Pombase
    • Proteins
    • Research
    • Biological
    • Cellular
  • genome
    • Data
    • Functional
    • Schizosaccharomyces
    • Wide
    • Curated
    • Datasets
    • Features
    • Gene-specific
    • Manually
    • Organism
    • Pombe
    • Sequence
  • gene ontology
    • Either
    • Genes
    • Specific
    • Gene-specific
    • Protein
    • Sequence
    • Using
    • Human
    • Schizosaccharomyces
    • Website
    • Wide
    • Yeast
  • biological
    • Cellular
    • Either
    • Features
    • Gene
    • Gene-specific
    • Protein
    • Sequence
    • Using
    • Genes
    • Data
    • Fission
    • Functional
  • model organism
    • Pombe
    • Data
    • Functional
    • Organism
    • Schizosaccharomyces
    • Wide
    • Curated
    • Features
    • Gene-specific
    • Genome
    • Manually
    • Sequence

Connections between topic areas Semantic bridges

For PomBase, one of the stronger structural bridges in this analysis connects PomBase with Overview. Bridges highlight paths between different parts of the map and can reveal research angles that are easy to miss in a flat list.

Min side: 3
PomBase — Overview · splits 17 ⟂ 5
PomBase — Data Curation and Quality Control · splits 17 ⟂ 5
PomBase — Data Organization · splits 18 ⟂ 4
PomBase — Documentation · splits 19 ⟂ 3

Map overview Semantic statistics

PomBase

Nodes22
Edges21
Triples31
Avg. degree1.91
Density0.090909
Components1

Source & methodology

TTTA analyzes the structure around PomBase to surface related topics, entities, relationships, concept neighborhoods and bridge connections. Use the map to explore areas such as Community & Products, including less central topics that may reveal useful research gaps. Automatically extracted connections are research leads rather than rewritten encyclopedia content.

Source: Wikipedia — PomBase · EN edition · Analysis: TopicsToTalkAbout

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