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PomBase

PomBase is a model organism database that provides online access to the fission yeast Schizosaccharomyces pombe genome sequence and annotated features, together with a wide range of manually curated functional gene-specific data. The PomBase website was redeveloped in 2016 to provide users with a more fully integrated, better-performing service…

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Data Curation and Quality Control

NcRNAAllelesGenotypesOrthologs
4 related topics

Data Organization

Gene OntologyBiologicalSequence Ontology
3 related topics

Documentation

S. pombeModel organism
2 related topics

Community co-Curation

Canto
1 related topics

Key facts & relationships

High-confidence facts extracted from structured source data. Use them as anchors for further research.

Authors
Antonia Lock, Midori A Harris, Manuel Lera-Ramírez, Pascal Carme, Kim Rutherford, Juan Mata, Jürg Bähler, Steve Oliver, Valerie Wood
Bookmarkable entities
Yes
Curation policy
Professionally and community curated
Data types captured
Molecular Function, Biological Process, Cellular Component, Phenotype, Genotype, Allele, Protein Modification, Gene Expression, Protein expression, Nucleotide Sequence, RNA sequ…
Description
The scientific resource for Schizosaccharomyces pombe
Download URL
Downloads

Topics to explore

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Overview

Data Curation and Quality Control

Data Organization

Community co-Curation

  • Canto Canto (gene curation tool)

Knowledgebase Updates

Documentation

Advanced semantic analysis

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Map overview Semantic statistics

PomBase

Nodes22
Edges21
Triples31
Avg. degree1.91
Density0.090909
Components1

How this topic connects Entity context

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PomBase

Top relations

related to Documentation · 8
PomBase → Developments, Eukaryotic Genomic Databases, FAQ, For, Methods, NAR Database Issue, Protocols, Usage
related to Gene Characterization Status · 4
PomBase → Remarkably, The, The GO, To
related to Community co-Curation · 3
PomBase → Canto, Community, To
related to Knowledgebase Updates · 2
PomBase → News, Nucleic Acids Research
Authors · 1
PomBase → Antonia Lock, Midori A Harris, Manuel Lera-Ramírez, Pascal Carme, Kim Rutherford, Juan Mata, Jürg Bähler, Steve Oliver, Valerie Wood
Bookmarkable entities · 1
PomBase → Yes
Curation policy · 1
PomBase → Professionally and community curated
Data types captured · 1
PomBase → Molecular Function, Biological Process, Cellular Component, Phenotype, Genotype, Allele, Protein Modification, Gene Expression, Protein expression, Nucleotide Sequence, RNA sequ…
Description · 1
PomBase → The scientific resource for Schizosaccharomyces pombe
Download URL · 1
PomBase → Downloads

Important terminology Word statistics

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Important terminology

yeast data fission curated genome gene community research pombe sequence features curation genes manually protein human biological annotations proteins organism

Entity relationships Subject–Predicate–Object triples

SubjectPredicateObjectConfidenceSrc
PomBaseAuthorsAntonia Lock, Midori A Harris, Manuel Lera-Ramírez, Pascal Carme, Kim Rutherford, Juan Mata, Jürg Bähler, Steve Oliver, Valerie Wood1.00infobox
PomBaseBookmarkable entitiesYes1.00infobox
PomBaseCuration policyProfessionally and community curated1.00infobox
PomBaseData types capturedMolecular Function, Biological Process, Cellular Component, Phenotype, Genotype, Allele, Protein Modification, Gene Expression, Protein expression, Nucleotide Sequence, RNA sequ…1.00infobox
PomBaseDescriptionThe scientific resource for Schizosaccharomyces pombe1.00infobox
PomBaseDownload URLDownloads1.00infobox
PomBaseLicenseCreative Commons Attribution 4.0 International license, GNU General Public License, MIT License1.00infobox
PomBaseOrganismsSchizosaccharomyces pombe1.00infobox
PomBasePrimary citationCarme, et al (2026)1.00infobox
PomBaseRelease date20111.00infobox
PomBaseResearch centerUniversity of Cambridge and University College London1.00infobox
PomBaseWebsitepombase.org1.00infobox
PomBaseis amodel organism database that provides online access to the fission yeast Schizosaccharomyces pombe genome sequence and annotated features0.90text

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    Min side: 3
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