PICRUSt

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Genome prediction algorithm

Confidence intervals Copy numbers Continuous traits Evolutionary model Brownian Motion

14 related topics

Metagenome prediction algorithm

Metagenome Shotgun metagenomics Human microbiome Human Microbiome Project Guerrero Negro

6 related topics

The Nearest Sequenced Taxon Index

Evolutionary comparative genomics Phylogenetic distance Sequenced genome

3 related topics

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Developers: Morgan Langille, Jesse Zaneveld, Daniel McDonald, Greg Caporaso, Gavin Douglas
Original authors: Morgan Langille, Jesse Zaneveld, Dan Knights, Joshua A Reyes, Jose C Clemente, Deron E Burkepile, Rebecca L Vega Thurber, Rob Knight, Robert G Beiko, Curtis Huttenhower
Release: 29 July 2013; 13 years ago (2013-07-29)
Written in: Python, R

Topics to explore

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Overview

Bioinformatics
Metagenomic
Microbial
Marker gene
Operational taxonomic unit
16S ribosomal RNA
Cluster Cluster analysis
Genomes
Amplicon library Amplicon library?action=edit&redlink=1

Genome prediction algorithm

Confidence intervals
Copy numbers Copy numbers?action=edit&redlink=1
Continuous traits Continuous traits?action=edit&redlink=1
Evolutionary model
Brownian Motion
Maximum Likelihood
Relaxed Maximum Likelihood Relaxed Maximum Likelihood?action=edit&redlink=1
Wagner Parsimony Wagner Parsimony?action=edit&redlink=1
Nearest neighbor Nearest neighbor search
Continuous trait Continuous trait?action=edit&redlink=1
Phylogeny
Phylogenetic inference
Lack of genomic data Lack of genomic data?action=edit&redlink=1
16S rRNA

Metagenome prediction algorithm

Metagenome
Shotgun metagenomics Shotgun metagenomics?action=edit&redlink=1
Human microbiome
Human Microbiome Project
Guerrero Negro
Microbial mats

The Nearest Sequenced Taxon Index

Evolutionary comparative genomics Evolutionary comparative genomics?action=edit&redlink=1
Phylogenetic distance Phylogenetic distance?action=edit&redlink=1
Sequenced genome

Related tools

Shotgun metagenomes Shotgun metagenomes?action=edit&redlink=1
Phylogenetic trait prediction Phylogenetic trait prediction?action=edit&redlink=1
Enzyme Commission numbers Enzyme Commission number
Second Genome
KEGG
SILVA ribosomal RNA database

Advanced semantic analysis

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Map overview Semantic statistics

Nodes44

Edges43

Triples41

Avg. degree1.95

Density0.045455

Components1

How this topic connects Entity context

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PICRUSt

Top relations

related to Genome prediction algorithm · 11

PICRUSt → Brownian Motion, However, In, Maximum Likelihood, More, Notably, OTUs, Relaxed Maximum Likelihood, These, This, Wagner Parsimony This

related to Metagenome prediction algorithm · 10

PICRUSt → Finally, Guerrero Negro, Human Microbiome Project, In, Langille, OTU, Test, The, This, When

related to The Nearest Sequenced Taxon Index · 9

PICRUSt → Because PICRUSt, For, Guerrero Negro, Human Microbiome Project, In, Nearest Sequenced Taxon Index, NSTI, PICRUSt's, This

related to Related tools · 4

PICRUSt → CopyRighter, Nearest Neighbor, Okuda, They

is a · 2

PICRUSt → bioinformatics software package, sample by functional-gene-count matrix

Developers · 1

PICRUSt → Morgan Langille, Jesse Zaneveld, Daniel McDonald, Greg Caporaso, Gavin Douglas

Original authors · 1

PICRUSt → Morgan Langille, Jesse Zaneveld, Dan Knights, Joshua A Reyes, Jose C Clemente, Deron E Burkepile, Rebecca L Vega Thurber, Rob Knight, Robert G Beiko, Curtis Huttenhower

Release · 1

PICRUSt → 29 July 2013; 13 years ago (2013-07-29)

Website · 1

PICRUSt → picrust.github.io/picrust/

Written in · 1

PICRUSt → Python, R

Important terminology Word statistics

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Important terminology

gene 16s sequenced rrna tool prediction genomes copy sequences samples genome metagenome sample reference family numbers phylogenetic based nearest predictions

Entity relationships Subject–Predicate–Object triples

Subject	Predicate	Object	Confidence	Src
PICRUSt	Developers	Morgan Langille, Jesse Zaneveld, Daniel McDonald, Greg Caporaso, Gavin Douglas	1.00	infobox
PICRUSt	Original authors	Morgan Langille, Jesse Zaneveld, Dan Knights, Joshua A Reyes, Jose C Clemente, Deron E Burkepile, Rebecca L Vega Thurber, Rob Knight, Robert G Beiko, Curtis Huttenhower	1.00	infobox
PICRUSt	Release	29 July 2013; 13 years ago (2013-07-29)	1.00	infobox
PICRUSt	Website	picrust.github.io/picrust/	1.00	infobox
PICRUSt	Written in	Python, R	1.00	infobox
PICRUSt	is a	bioinformatics software package	0.90	text
PICRUSt	is a	sample by functional-gene-count matrix	0.90	text
PICRUSt	related to Genome prediction algorithm	In	0.60	section
PICRUSt	related to Genome prediction algorithm	More	0.60	section
PICRUSt	related to Genome prediction algorithm	These	0.60	section
PICRUSt	related to Genome prediction algorithm	Brownian Motion	0.60	section
PICRUSt	related to Genome prediction algorithm	Maximum Likelihood	0.60	section

Related concept clusters Concept neighborhoods

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Connections between topic areas Semantic bridges

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