Research any topic before you write.

Find related topics. | Discover entities. | See connections. | Build a topical map.

Orientations of Proteins in Membranes database

Orientations of Proteins in Membranes (OPM) database provides spatial positions of membrane protein structures with respect to the lipid bilayer. Positions of the proteins are calculated using an implicit solvation model of the lipid bilayer. The results of calculations were verified against experimental studies of spatial arrangement of transmembrane…

Products & Overview

Use the mouse wheel or two fingers (on touchscreens) to zoom in and out of the map.

Research this topic

Explore the main themes, entities and connections around Orientations of Proteins in Membranes database. Start with the topic map, then use the sections below for research and deeper semantic analysis.

Explore this topic

Start with a few of the strongest sections from the source topic. These are research directions, not a list of keywords you must use.

Key facts & relationships

High-confidence facts extracted from structured source data. Use them as anchors for further research.

Curation policy
Curated
Data format
modified PDB format
Data types captured
Protein structures from the PDB
Description
The database provides spatial arrangement of proteins in the lipid bilayer
Download URL
OPM files
License
CC-BY 3.0

Topics to explore

Browse the full topic structure. Each item opens a new analysis centered on that subject.

Overview

Advanced semantic analysis

Deeper signals for content research, entity SEO and topical coverage. The plain-language headings explain what each technical view is useful for.

Map overview Semantic statistics

Orientations of Proteins in Membranes database

Nodes16
Edges15
Triples13
Avg. degree1.88
Density0.125
Components1

How this topic connects Entity context

See the strongest relationship patterns around the current topic before diving into the raw triples.

Orientations of Proteins in Membranes database

Top relations

Curation policy · 1
Orientations of Proteins in Membranes database → Curated
Data format · 1
Orientations of Proteins in Membranes database → modified PDB format
Data types captured · 1
Orientations of Proteins in Membranes database → Protein structures from the PDB
Description · 1
Orientations of Proteins in Membranes database → The database provides spatial arrangement of proteins in the lipid bilayer
Download URL · 1
Orientations of Proteins in Membranes database → OPM files
License · 1
Orientations of Proteins in Membranes database → CC-BY 3.0
Organisms · 1
Orientations of Proteins in Membranes database → All
Primary citation · 1
Orientations of Proteins in Membranes database → .mw-parser-output cite.citation{font-style:inherit;word-wrap:break-word}.mw-parser-output .citation q{quotes:"\"""\"""'""'"}.mw-parser-output .citation:target{background-color:r…
Release date · 1
Orientations of Proteins in Membranes database → 2005
Research center · 1
Orientations of Proteins in Membranes database → University of Michigan College of Pharmacy

Important terminology Word statistics

Use these terms to understand the vocabulary surrounding the topic, not as a checklist for keyword stuffing.

Important terminology

proteins structures protein membrane database spatial lipid bilayer calculated experimental membrane-associated membranes opm provides positions arrangement data studies bank also

Entity relationships Subject–Predicate–Object triples

SubjectPredicateObjectConfidenceSrc
Orientations of Proteins in Membranes databaseCuration policyCurated1.00infobox
Orientations of Proteins in Membranes databaseData formatmodified PDB format1.00infobox
Orientations of Proteins in Membranes databaseData types capturedProtein structures from the PDB1.00infobox
Orientations of Proteins in Membranes databaseDescriptionThe database provides spatial arrangement of proteins in the lipid bilayer1.00infobox
Orientations of Proteins in Membranes databaseDownload URLOPM files1.00infobox
Orientations of Proteins in Membranes databaseLicenseCC-BY 3.01.00infobox
Orientations of Proteins in Membranes databaseOrganismsAll1.00infobox
Orientations of Proteins in Membranes databasePrimary citation.mw-parser-output cite.citation{font-style:inherit;word-wrap:break-word}.mw-parser-output .citation q{quotes:"\"""\"""'""'"}.mw-parser-output .citation:target{background-color:r…1.00infobox
Orientations of Proteins in Membranes databaseRelease date20051.00infobox
Orientations of Proteins in Membranes databaseResearch centerUniversity of Michigan College of Pharmacy1.00infobox
Orientations of Proteins in Membranes databaseVersion2.01.00infobox
Orientations of Proteins in Membranes databaseWebServer for calculating positions of proteins in membranes1.00infobox
Orientations of Proteins in Membranes databaseWebsitehttps://opm.phar.umich.edu1.00infobox

Related concept clusters Concept neighborhoods

These clusters group vocabulary that occurs around closely connected concepts in the source material.

    Connections between topic areas Semantic bridges

    Bridges can reveal useful research angles that are easy to miss in a flat list of related terms.

    Min side: 3
    For writers, content strategists, SEOs, marketers and creators — from quick topic research to advanced semantic analysis.