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Metatranscriptomics is the set of techniques used to study gene expression of microbes within natural environments, i.e., the metatranscriptome.
Applications, Computational analysis & Tools and techniques
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expression genes microbiome analysis different used rna-seq gene microbial rna microarrays gut mrna functional metatranscriptomic community using pipeline reads host
| Subject | Predicate | Object | Confidence | Src |
|---|---|---|---|---|
| Metatranscriptomics | is a | set of techniques used to study gene expression of microbes within natural environments | 0.90 | text |
| HUMAnN | instance of | often as open source platforms | 0.80 | text |
| the more recent HUMAnN2 | instance of | often as open source platforms | 0.80 | text |
| MetaTrans | instance of | often as open source platforms | 0.80 | text |
| SAMSA | instance of | often as open source platforms | 0.80 | text |
| Leimena-2013 | instance of | often as open source platforms | 0.80 | text |
| mOTUs2.HUMAnN2HUMAnN2 is a bioinformatic pipeline designed from the previous HUMAnN software | instance of | often as open source platforms | 0.80 | text |
| which was developed during the Human Microbiome Project | instance of | often as open source platforms | 0.80 | text |
| MetaHIT-2014 always by using SOAP2 tool | instance of | while for functional analysis sequences are mapped against a functional database | 0.80 | text |
| quality control | instance of | which performs further steps | 0.80 | text |
| gene calling | instance of | which performs further steps | 0.80 | text |
| clustering of amino acid sequences | instance of | which performs further steps | 0.80 | text |
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