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Hydrophobicity scales

Hydrophobicity scales are values that define the relative hydrophobicity or hydrophilicity of amino acid residues. The more positive the value, the more hydrophobic are the amino acids located in that region of the protein. These scales are commonly used to predict the transmembrane alpha-helices of membrane proteins. When consecutively measuring amino…

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Overview

Hydrophobicity and the hydrophobic effect

Types of amino acid hydrophobicity scales

Partitioning methods

Accessible surface area methods

Chromatographic methods

Site-directed mutagenesis

Physical property methods

Wimley–White whole residue hydrophobicity scales

Bandyopadhyay-Mehler protein structure based scales

Scale based on contact angle of water nanodroplet

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Map overview Semantic statistics

Hydrophobicity scales

Nodes51
Edges50
Triples45
Avg. degree1.96
Density0.039216
Components1

How this topic connects Entity context

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Hydrophobicity scales

Top relations

has method · 10
Hydrophobicity scales → Another, Examples, Hydrophobicity, Kcal/residue, NaCl, Physical, Protein Data Bank, Results, The, This
related to Bandyopadhyay-Mehler protein structure based scales · 10
Hydrophobicity scales → Advantage, Bandyopadhyay-Mehler, Computation, For, Hence, Most, Protein, Rekker's Fragmental Constants, The, This
related to Types of amino acid hydrophobicity scales · 10
Hydrophobicity scales → Biswas, Both, Janin, Rose, Since, The, The Expasy Protscale, There, These, This
has application · 8
Hydrophobicity scales → B-strands, Hydrophobicity, Palliser, Parry, They, Trinquier, UCAG, UGCA
related to Wimley–White whole residue hydrophobicity scales · 5
Hydrophobicity scales → First, Second, The Wimley, Two, White

Important terminology Word statistics

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Important terminology

amino hydrophobicity scales protein water scale used acids hydrophobic acid free surface residue energy methods based values partitioning structure two

Entity relationships Subject–Predicate–Object triples

SubjectPredicateObjectConfidenceSrc
micellar phasesinstance ofNon liquid phases can also be used with partitioning methods0.80text
vapor phasesinstance ofNon liquid phases can also be used with partitioning methods0.80text
Hydrophobicity scaleshas applicationPalliser0.60section
Hydrophobicity scaleshas applicationParry0.60section
Hydrophobicity scaleshas applicationB-strands0.60section
Hydrophobicity scaleshas applicationHydrophobicity0.60section
Hydrophobicity scaleshas applicationTrinquier0.60section
Hydrophobicity scaleshas applicationThey0.60section
Hydrophobicity scaleshas applicationUGCA0.60section
Hydrophobicity scaleshas applicationUCAG0.60section
Hydrophobicity scaleshas methodHydrophobicity0.60section
Hydrophobicity scaleshas methodThis0.60section

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    Researching Hydrophobicity scales? Use this map to explore Regions, Hydrophobicity and the hydrophobic effect & Scale based on contact angle of water nanodroplet and other closely related topics, then follow useful entities and relationships into deeper research. Automatically generated connections are research leads, so verify important facts in reliable sources.