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H3F3A: Overview, Related Topics & Entities

Histone H3.3 is a protein that in humans is encoded by the H3F3A and H3F3B genes. It plays an essential role in maintaining genome integrity during mammalian development.

Language: English [EN]
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H3F3A topic overview

The analysis highlights Overview, Related Topics and Entities as prominent areas in the source structure around H3F3A.

Related topics
10
Source areas
1
Connected nodes
11
Extracted relationships
100
Concept neighborhoods
7
Bridge connections
11

What this topic covers Research coverage

Source areas are shown by the number of related topics found in each part of the analysis. Use smaller areas too: they can reveal specialized angles and content gaps.

Overview · 10 topics

Smaller areas are not necessarily less important. They contain fewer connections in this analysis and can be useful for finding specialized angles or coverage gaps.

Key facts & relationships

High-confidence facts extracted from structured source data. Use them as anchors for further research.

Aliases
H3-3A, H3.3A, H3F3, H3 histone, family 3A, H3 histone family member 3A, H3.3 histone A, H3F3A, H3-3B
Available structures
Available structuresPDBOrtholog search: PDBe RCSB List of PDB id codes4H9O, 5BNX, 3JVK, 5DWQ, 4L58, 4TMP, 5DX0, 4H9S, 4W5A, 3AV2, 3WTP, 4HGA, 4GUS, 4GY5, 3MUK, 3QLC, 4H9Q, 4N4I,…
Band
1q42.12 · 1|1 H4
Bgee
ganglionic eminence · ventricular zone · monocyte · blood · endometrium
BioGPS
n/a
Chr.
Chromosome 1 (human) · Chromosome 1 (mouse)

Explore all related topics Closing gaps

Browse the complete topic structure, not only the most central items. Less prominent entities and concepts can reveal missing angles, specialized context and useful research gaps. Each item opens a new analysis centered on that subject.

Overview

Advanced semantic analysis

Deeper signals for content research, entity SEO and topical coverage. The plain-language headings explain what each technical view is useful for.

How H3F3A connects Entity context

The extracted context around H3F3A shows recurring relationship patterns in the source. For example, H3F3A → Barr body, blood coagulation, brain development, cell population proliferation, chromosome, DNA binding, embryo implantation, epigenetic maintenance of chromatin in transcription-competent conformation, extracellular exosome, extracellular region, histone binding, male gonad development, multicellular organism growth, muscle cell differentiation, negative regulation of chromosome condensation, negative regulation of gene expression, epigenetic, nuclear chromosome, nucleoplasm, nucleosomal DNA binding, nucleosome Another extracted example is H3F3A → appendix, blood, bone marrow, corpus callosum, endometrium, epiblast, gallbladder, ganglionic eminence, granulocyte, ileum, lip, mesencephalon, monocyte, neural tube, rectum, thymus, ventricular zone. Use these groups to spot repeated connection types before inspecting the individual relationships.

H3F3A

Top relations

Gene ontology · 43
H3F3A → Barr body, blood coagulation, brain development, cell population proliferation, chromosome, DNA binding, embryo implantation, epigenetic maintenance of chromatin in transcription-competent conformation, extracellular exosome, extracellular region, histone binding, male gonad development, multicellular organism growth, muscle cell differentiation, negative regulation of chromosome condensation, negative regulation of gene expression, epigenetic, nuclear chromosome, nucleoplasm, nucleosomal DNA binding, nucleosome
Bgee · 17
H3F3A → appendix, blood, bone marrow, corpus callosum, endometrium, epiblast, gallbladder, ganglionic eminence, granulocyte, ileum, lip, mesencephalon, monocyte, neural tube, rectum, thymus, ventricular zone
RNA expression pattern · 17
H3F3A → appendix, blood, bone marrow, corpus callosum, endometrium, epiblast, gallbladder, ganglionic eminence, granulocyte, ileum, lip, mesencephalon, monocyte, neural tube, rectum, thymus, ventricular zone
Band · 2
H3F3A → 1q42.12, 1|1 H4
Chr. · 2
H3F3A → Chromosome 1 (human), Chromosome 1 (mouse)
End · 2
H3F3A → 180,641,508 bp, 226,073,212 bp
Aliases · 1
H3F3A → H3-3A, H3.3A, H3F3, H3 histone, family 3A, H3 histone family member 3A, H3.3 histone A, H3F3A, H3-3B
Available structures · 1
H3F3A → Available structuresPDBOrtholog search: PDBe RCSB List of PDB id codes4H9O, 5BNX, 3JVK, 5DWQ, 4L58, 4TMP, 5DX0, 4H9S, 4W5A, 3AV2, 3WTP, 4HGA, 4GUS, 4GY5, 3MUK, 3QLC, 4H9Q, 4N4I,…
BioGPS · 1
H3F3A → n/a
Databases · 1
H3F3A → NCBI: entry; OMA: entry

Important terminology

Use these terms to understand the vocabulary surrounding the topic, not as a checklist for keyword stuffing.

Important terminology

histone bp h3 also chr human chromosome band gene protein dna h3f3b genes location encoded histones nucleosomes lys27met dipg nucleosome

H3F3A relationships Subject–Predicate–Object triples

TTTA extracted 100 structured relationships around H3F3A. Examples in this analysis include H3F3A → Aliases → H3-3A, H3.3A, H3F3, H3 histone, family 3A, H3 histone family member 3A, H3.3 histone A, H3F3A, H3-3B and H3F3A → Available structures → Available structuresPDBOrtholog search: PDBe RCSB List of PDB id codes4H9O, 5BNX, 3JVK, 5DWQ, 4L58, 4TMP, 5DX0, 4H9S, 4W5A, 3AV2, 3WTP, 4HGA, 4GUS, 4GY5, 3MUK, 3QLC, 4H9Q, 4N4I,…. The table shows each extracted connection, where it came from and its confidence.

SubjectPredicateObjectConfidenceSrc
H3F3AAliasesH3-3A, H3.3A, H3F3, H3 histone, family 3A, H3 histone family member 3A, H3.3 histone A, H3F3A, H3-3B1.00infobox
H3F3AAvailable structuresAvailable structuresPDBOrtholog search: PDBe RCSB List of PDB id codes4H9O, 5BNX, 3JVK, 5DWQ, 4L58, 4TMP, 5DX0, 4H9S, 4W5A, 3AV2, 3WTP, 4HGA, 4GUS, 4GY5, 3MUK, 3QLC, 4H9Q, 4N4I,…1.00infobox
H3F3ABand1q42.121.00infobox
H3F3ABand1|1 H41.00infobox
H3F3ABgeeganglionic eminence1.00infobox
H3F3ABgeeventricular zone1.00infobox
H3F3ABgeemonocyte1.00infobox
H3F3ABgeeblood1.00infobox
H3F3ABgeeendometrium1.00infobox
H3F3ABgeerectum1.00infobox
H3F3ABgeecorpus callosum1.00infobox
H3F3ABgeegranulocyte1.00infobox
H3F3ABgeeappendix1.00infobox
H3F3ABgeegallbladder1.00infobox
H3F3ABgeeneural tube1.00infobox
H3F3ABgeemesencephalon1.00infobox
H3F3ABgeethymus1.00infobox
H3F3ABgeelip1.00infobox
H3F3ABgeebone marrow1.00infobox
H3F3ABgeeileum1.00infobox
H3F3ABgeeepiblast1.00infobox
H3F3ABioGPSn/a1.00infobox
H3F3AChr.Chromosome 1 (human)1.00infobox
H3F3AChr.Chromosome 1 (mouse)1.00infobox
H3F3ADatabasesNCBI: entry; OMA: entry1.00infobox
H3F3AEnd226,073,212 bp1.00infobox
H3F3AEnd180,641,508 bp1.00infobox
H3F3AEnsemblENSG000001630411.00infobox
H3F3AEntrez30201.00infobox
H3F3AExternal IDsOMIM: 601128; MGI: 1097686; GeneCards: H3-3A1.00infobox

Related concept clusters Concept neighborhoods

The concept neighborhoods around H3F3A bring nearby vocabulary together. In this analysis, examples include Also, H3f3b and Histone. Use the clusters to find adjacent concepts and terminology that may deserve separate research.

  • h3.1
    • Histone
    • H3f3a
    • Encoded
    • Family
    • Member
    • Protein
    • Bp
    • Dipg
    • Lys27met
    • Core
    • Genes
    • H3-3a
  • giant cell tumor of bone
    • Bone
    • Cell
    • Chromatin
    • Core
    • Development
    • End
    • H3-3a
    • H3f3b
    • H4
    • Mouse
    • Mrna
    • Nuclear
  • H3F3A
    • Also
    • H3f3b
    • Histone
    • Dipg
    • Lys27met
    • Bone
    • Cell
    • Family
    • Genes
    • H3-3a
    • Member
    • Search
  • h3f3a
    • Also
    • H3f3b
    • Histone
    • Dipg
    • Lys27met
    • Bone
    • Cell
    • Family
    • Genes
    • H3-3a
    • Member
    • Search
  • genes
    • H3f3b
    • Mrna
    • Histone
    • Protein
    • Gene
    • H3
    • H3f3a
  • h3f3b
    • Bone
    • Cell
    • Genes
    • Also
    • Protein
    • Histone
  • protein
    • Search

Connections between topic areas Semantic bridges

Bridges highlight paths between different parts of the H3F3A map and can reveal research angles that are easy to miss in a flat list.

Min side: 3

Map overview Semantic statistics

H3F3A

Nodes12
Edges11
Triples100
Avg. degree1.83
Density0.166667
Components1

Source & methodology

TTTA analyzes the structure around H3F3A to surface related topics, entities, relationships, concept neighborhoods and bridge connections. Use the map to explore areas such as Overview, Related Topics & Entities, including less central topics that may reveal useful research gaps. Automatically extracted connections are research leads rather than rewritten encyclopedia content.

Source: Wikipedia — H3F3A · EN edition · Analysis: TopicsToTalkAbout

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