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Domine Database

DOMINE is a database of known and predicted protein domain interactions (or domain-domain interactions). It contains interactions observed in PDB crystal structures, and those predicted by several computational approaches. DOMINE uses Pfam HMM profiles for protein domain definitions. The DOMINE database contains 26,219 interactions among 5,410 domains…

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Overview

DatabaseDomainsPDBPfam
4 related topics

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Description
comprehensive collection of known and predicted domain-domain interactions.
Laboratory
Systems Biology
Primary citation
Yellaboina et al. (2011)
Release date
2010
Research center
National Institute of Environmental Health Sciences, National Institutes of Health

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Domine Database

Nodes6
Edges5
Triples7
Avg. degree1.67
Density0.333333
Components1

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Domine Database

Top relations

Description · 1
Domine Database → comprehensive collection of known and predicted domain-domain interactions.
Laboratory · 1
Domine Database → Systems Biology
Primary citation · 1
Domine Database → Yellaboina et al. (2011)
Release date · 1
Domine Database → 2010
Research center · 1
Domine Database → National Institute of Environmental Health Sciences, National Institutes of Health
Website · 1
Domine Database → https://manticore.niehs.nih.gov/domine
see also · 1
Domine Database → DOMINE

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Important terminology

domine interactions database known predicted pdb protein domain contains domain-domain pfam domains observed crystal structures several computational approaches uses hmm

Entity relationships Subject–Predicate–Object triples

SubjectPredicateObjectConfidenceSrc
Domine DatabaseDescriptioncomprehensive collection of known and predicted domain-domain interactions.1.00infobox
Domine DatabaseLaboratorySystems Biology1.00infobox
Domine DatabasePrimary citationYellaboina et al. (2011)1.00infobox
Domine DatabaseRelease date20101.00infobox
Domine DatabaseResearch centerNational Institute of Environmental Health Sciences, National Institutes of Health1.00infobox
Domine DatabaseWebsitehttps://manticore.niehs.nih.gov/domine1.00infobox
Domine Databasesee alsoDOMINE0.60section

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