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Dockerin

Dockerin is a protein domain found in the cellulosome cellular structure of anaerobic bacteria. It is found on many endoglucanase enzymes. The dockerin's binding partner is the cohesin domain, located on the scaffoldin protein. This interaction between the dockerin domains of the enzyme constituents of the cellulosome and the cohesin domains of the…

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Art & Overview

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Key facts & relationships

High-confidence facts extracted from structured source data. Use them as anchors for further research.

AlphaFold
IPR018242 · PF00404
Available protein structures:
IPR018242 · PF00404
CDD
cd14253
InterPro
IPR018242
PDB
IPR018242 PF00404 (ECOD; PDBsum)
Pfam
PF00404

Topics to explore

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Overview

Advanced semantic analysis

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Map overview Semantic statistics

Number of nodes, edges, triples, density and central hubs. Use it to gauge the size and connectivity of the map.

Dockerin

Nodes14
Edges13
Triples27
Avg. degree1.86
Density0.142857
Components1

How this topic connects Entity context

Quick relationship hints grouped by predicate. Useful for spotting recurring semantic connections around the current entity.

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Dockerin

Top relations

related to External links · 15
Dockerin → Bayer EA, Cellulosomes-structure, Heckman MP, Lamed, Lytle BL, Mol Biol, PMID, Protein Structure, Shimon LJ, Shoham, Solution, Struct Biol, Volkman BF, Westler WM, Wu JH
AlphaFold · 2
Dockerin → IPR018242, PF00404
Available protein structures: · 2
Dockerin → IPR018242, PF00404
CDD · 1
Dockerin → cd14253
InterPro · 1
Dockerin → IPR018242
PDB · 1
Dockerin → IPR018242 PF00404 (ECOD; PDBsum)
Pfam · 1
Dockerin → PF00404
PROSITE · 1
Dockerin → PDOC00416
SCOP2 · 1
Dockerin → 1daq / SCOPe / SUPFAM
Symbol · 1
Dockerin → Dockerin_1

Important terminology Word statistics

Frequent words and multi-word phrases across the lead, headings, infobox and body. Useful for terminology coverage.

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Important terminology

type domain protein cohesin structure cellulosome binding doi pmid interaction well 10 domains ii scaffoldin specificity found complex motif characterized

Entity relationships Subject–Predicate–Object triples

Extracted RDF-like relationships with confidence and source. The table includes structured facts and lower-confidence contextual relations.
SubjectPredicateObjectConfidenceSrc
DockerinAlphaFoldIPR0182421.00infobox
DockerinAlphaFoldPF004041.00infobox
DockerinAvailable protein structures:IPR0182421.00infobox
DockerinAvailable protein structures:PF004041.00infobox
DockerinCDDcd142531.00infobox
DockerinInterProIPR0182421.00infobox
DockerinPDBIPR018242 PF00404 (ECOD; PDBsum)1.00infobox
DockerinPfamPF004041.00infobox
DockerinPROSITEPDOC004161.00infobox
DockerinSCOP21daq / SCOPe / SUPFAM1.00infobox
DockerinSymbolDockerin_11.00infobox
Dockerinis aprotein domain found in the cellulosome cellular structure of anaerobic bacteria0.90text

Related concept clusters Concept neighborhoods

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