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DNase-Seq

DNase-seq (DNase I hypersensitive sites sequencing) is a method in molecular biology used to identify the location of regulatory regions, based on the genome-wide sequencing of regions sensitive to cleavage by DNase I. FAIRE-Seq is a successor of DNase-seq for the genome-wide identification of accessible DNA regions in the genome. Both the protocols for…

Regions, DNase-seq Footprinting & Overview

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Overview

DNase-seq Footprinting

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DNase-Seq

Nodes13
Edges12
Triples19
Avg. degree1.85
Density0.153846
Components1

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DNase-Seq

Top relations

related to DNase-seq Footprinting · 13
DNase-Seq → Boyle, CENTIPEDE, Cuellar-Partida, DNA, DNA-protein, Examples, Hidden Markov, HINT, Neph, Position, Segmentation-based, Site-centric, The
related to External links · 5
DNase-Seq → CENTIPEDE Website, DNase, HINT, R/BioconductorHINT, Tutorial

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Important terminology

regions faire-seq genome-wide chromatin methods method open higher non-promoter footprints dnase sites regulatory based dna genome hand footprinting hint nucleosome

Entity relationships Subject–Predicate–Object triples

SubjectPredicateObjectConfidenceSrc
Position weight matrixinstance ofencoded in structures0.80text
DNase-Seqrelated to DNase-seq FootprintingDNA0.60section
DNase-Seqrelated to DNase-seq FootprintingThe0.60section
DNase-Seqrelated to DNase-seq FootprintingSegmentation-based0.60section
DNase-Seqrelated to DNase-seq FootprintingHidden Markov0.60section
DNase-Seqrelated to DNase-seq FootprintingExamples0.60section
DNase-Seqrelated to DNase-seq FootprintingHINT0.60section
DNase-Seqrelated to DNase-seq FootprintingBoyle0.60section
DNase-Seqrelated to DNase-seq FootprintingNeph0.60section
DNase-Seqrelated to DNase-seq FootprintingSite-centric0.60section
DNase-Seqrelated to DNase-seq FootprintingDNA-protein0.60section
DNase-Seqrelated to DNase-seq FootprintingPosition0.60section

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