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BioJava

BioJava is an open-source software project dedicated to providing Java tools for processing biological data. BioJava is a set of library functions written in the programming language Java for manipulating sequences, protein structures, file parsers, Common Object Request Broker Architecture (CORBA) interoperability, Distributed Annotation System (DAS)…

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Available in
English
Developers
Amr ALHOSSARY, Andreas Prlic, Dmytro Guzenko, Hannes Brandstätter-Müller, Jose Manuel Duarte, Thomas Down, Michael L Heuer, Peter Troshin, JianJiong Gao, Aleix Lafita, Peter Ros…
License
Lesser GPL 2.1
Original author
Andreas Prlić
Platform
Web browser with Java SE
Release
2002; 24 years ago (2002)

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Overview

Features

History and publications

Modules

Projects using BioJava

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Map overview Semantic statistics

BioJava

Nodes57
Edges56
Triples119
Avg. degree1.96
Density0.035088
Components1

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BioJava

Top relations

related to Projects using BioJava · 30
BioJava → An, Archived, Bioclipse, BioSense, Bioshell, BioWeka, Cytoscape, DAS, Dazzle, Dengue, Ensembl, GenBeans, Geneious, IDBS, InforSense Suite, Java, Java API, JEnsembl, Jstacs, Long Short-Term Memory
related to history · 14
BioJava → API, Bio, BioJava's, BioPerl, BioPython, BioRuby, EMBOSS, Examples, In October, Java-based Bioinformatics, Matthew Pocock, The BioJava, This, Thomas Down
related to Alignment module · 10
BioJava → For Multiple Sequence Alignment, Guan, In, Needleman-Wunsch, Sequences, Smith, The, This, Uberbacher, Waterman's
related to Core Module · 7
BioJava → BioJava3, DNA, Java, RNA, Specific, The, This
related to Comparisons with other alternatives · 6
BioJava → Bio, BioPerl, BioPython, BioRuby, Collectively, The
related to Modules · 6
BioJava → Apache Maven, DNA, During, It, The, These
related to Protein disorder module · 6
BioJava → Java, Java's, RONN, The, The BioJava, There
is a · 3
BioJava → active open source project that has been developed over more than 12 years and by more than 60 developers, open-source software project dedicated to providing Java tools for processing biological data, set of library functions written in the programming language Java for manipulating sequences
related to Features · 2
BioJava → Accessing, These
related to Protein structure modules · 2
BioJava → The, They

Important terminology Word statistics

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Important terminology

protein data sequences module bioinformatics sequence file formats java structures structure using modules open proteins software project pdb also web

Entity relationships Subject–Predicate–Object triples

SubjectPredicateObjectConfidenceSrc
BioJavaAvailable inEnglish1.00infobox
BioJavaDevelopersAmr ALHOSSARY, Andreas Prlic, Dmytro Guzenko, Hannes Brandstätter-Müller, Jose Manuel Duarte, Thomas Down, Michael L Heuer, Peter Troshin, JianJiong Gao, Aleix Lafita, Peter Ros…1.00infobox
BioJavaLicenseLesser GPL 2.11.00infobox
BioJavaOriginal authorAndreas Prlić1.00infobox
BioJavaPlatformWeb browser with Java SE1.00infobox
BioJavaRelease2002; 24 years ago (2002)1.00infobox
BioJavaRepositorygithub.com/biojava1.00infobox
BioJavaStable release6.0.3 / December 19, 2021; 4 years ago (2021-12-19)1.00infobox
BioJavaTypeBioinformatics1.00infobox
BioJavaWebsitebiojava.org1.00infobox
BioJavaWritten inJava1.00infobox
BioJavais aopen-source software project dedicated to providing Java tools for processing biological data0.90text
BioJavais aset of library functions written in the programming language Java for manipulating sequences0.90text
BioJavais aactive open source project that has been developed over more than 12 years and by more than 60 developers0.90text

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