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AlkB: Human homologs, Virus homologs & Overview

AlkB (Alkylation B) is a protein found in E. coli, induced during an adaptive response and involved in the direct reversal of alkylation damage. AlkB specifically removes alkylation damage to single stranded (SS) DNA caused by SN2 type of chemical agents. It efficiently removes methyl groups from 1-methyl adenines, 3-methyl cytosines in SS DNA. AlkB is…

Language: English [EN]
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AlkB topic overview

The analysis highlights Human homologs, Virus homologs and Overview as prominent areas in the source structure around AlkB.

Related topics
18
Source areas
3
Connected nodes
21
Extracted relationships
39
Concept neighborhoods
17
Bridge connections
21

What this topic covers Research coverage

Source areas are shown by the number of related topics found in each part of the analysis. Use smaller areas too: they can reveal specialized angles and content gaps.

Human homologs · 9 topics
Overview · 7 topics
Virus homologs · 2 topics

Smaller areas are not necessarily less important. They contain fewer connections in this analysis and can be useful for finding specialized angles or coverage gaps.

Explore all related topics Closing gaps

Browse the complete topic structure, not only the most central items. Less prominent entities and concepts can reveal missing angles, specialized context and useful research gaps. Each item opens a new analysis centered on that subject.

Overview

Human homologs

Virus homologs

Advanced semantic analysis

Deeper signals for content research, entity SEO and topical coverage. The plain-language headings explain what each technical view is useful for.

How AlkB connects Entity context

The extracted context around AlkB shows recurring relationship patterns in the source. For example, AlkB → Alphaflexiviridae, Betaflexiviridae, BlVY, Brambyvirus, Closteroviridae, ENMV, FENMV, French, P1, Potyviridae, Potyvirus, RNA, Secoviridae Another extracted example is AlkB → DNA, Experimental, Falnes, In, Lindahl, N6-acetaldehyde, N6-methyladenosine, Not, RNA, Sedgwick, Seeberg, This. Use these groups to spot repeated connection types before inspecting the individual relationships.

AlkB

Top relations

related to Virus homologs · 13
AlkB → Alphaflexiviridae, Betaflexiviridae, BlVY, Brambyvirus, Closteroviridae, ENMV, FENMV, French, P1, Potyviridae, Potyvirus, RNA, Secoviridae
related to Functions · 12
AlkB → DNA, Experimental, Falnes, In, Lindahl, N6-acetaldehyde, N6-methyladenosine, Not, RNA, Sedgwick, Seeberg, This
related to Human homologs · 10
AlkB → ALKBH2, ALKBH3, ALKBH4, ALKBH6, ALKBH7, ALKBH8, FTO, RNA, There, They
related to External links · 3
AlkB → Medicine Medical Subject Headings, MeSH, National Library
is a · 1
AlkB → alpha-ketoglutarate-dependent hydroxylase

Important terminology

Use these terms to understand the vocabulary surrounding the topic, not as a checklist for keyword stuffing.

Important terminology

rna dna alkylation damage protein ss domain plant coli type removes demethylase homologs hydroxylation viruses shown 1-methyl adenines 3-methyl cytosines

AlkB relationships Subject–Predicate–Object triples

TTTA extracted 39 structured relationships around AlkB. Examples in this analysis include AlkB → is a → alpha-ketoglutarate-dependent hydroxylase and AlkB → related to External links → National Library. The table shows each extracted connection, where it came from and its confidence.

SubjectPredicateObjectConfidenceSrc
AlkBis aalpha-ketoglutarate-dependent hydroxylase0.90text
AlkBrelated to External linksNational Library0.60section
AlkBrelated to External linksMedicine Medical Subject Headings0.60section
AlkBrelated to External linksMeSH0.60section
AlkBrelated to FunctionsSedgwick0.60section
AlkBrelated to FunctionsLindahl0.60section
AlkBrelated to FunctionsSeeberg0.60section
AlkBrelated to FunctionsFalnes0.60section
AlkBrelated to FunctionsNot0.60section
AlkBrelated to FunctionsDNA0.60section
AlkBrelated to FunctionsThis0.60section
AlkBrelated to FunctionsN6-acetaldehyde0.60section

Related concept clusters Concept neighborhoods

The concept neighborhoods around AlkB bring nearby vocabulary together. In this analysis, examples include Rna, Plant and Damage. Use the clusters to find adjacent concepts and terminology that may deserve separate research.

  • AlkB
    • Rna
    • Plant
    • Damage
    • Dna
    • Coli
    • Shown
    • Type
    • Viruses
    • Alkylation
    • Protein
    • Another
    • Domains
  • alkb
    • Rna
    • Plant
    • Damage
    • Dna
    • Coli
    • Shown
    • Type
    • Viruses
    • Alkylation
    • Protein
    • Another
    • Domains
  • alkb homolog 1, histone h2a dioxygenase
    • Rna
    • Plant
    • Damage
    • Dna
    • Coli
    • Shown
    • Type
    • Viruses
    • Alkylation
    • Protein
    • Another
    • Domains
  • alkb homolog 5, rna demethylase
    • Fto
    • Plant
    • Rna
    • Viruses
    • Domains
    • Show
    • Alkbh8
    • First
    • Damage
    • Dna
    • Domain
    • Ss
  • dna
    • Ss
    • Removes
    • Shown
    • Type
    • 1-methyl
    • 3-methyl
    • Adenines
    • Alkbh8
    • Another
    • Cytosines
    • Demethylates
    • Ethenoadenine
  • alkylation
    • Damage
    • Dna
    • 1-methyl
    • 3-methyl
    • Adenines
    • Also
    • Cytosines
    • Ethenoadenine
    • Removes
    • Thus
    • Coli
    • Hydroxylation
  • rna
    • Plant
    • Viruses
    • Domains
    • Show
    • Domain
    • Alkb-like
    • First
    • Methyltransferase
    • N6-methyladenosine
    • Proteins
    • Virus
    • Ss
  • demethylase
    • Fto
    • Rna
    • Alkbh8
    • Domains
    • First
    • Show
    • Ss
    • Viruses
    • Plant
    • Dna

Connections between topic areas Semantic bridges

For AlkB, one of the stronger structural bridges in this analysis connects AlkB with Human homologs. Bridges highlight paths between different parts of the map and can reveal research angles that are easy to miss in a flat list.

Min side: 3
AlkB — Human homologs · splits 12 ⟂ 10
AlkB — Overview · splits 14 ⟂ 8
AlkB — Virus homologs · splits 19 ⟂ 3

Map overview Semantic statistics

AlkB

Nodes22
Edges21
Triples39
Avg. degree1.91
Density0.090909
Components1

Source & methodology

TTTA analyzes the structure around AlkB to surface related topics, entities, relationships, concept neighborhoods and bridge connections. Use the map to explore areas such as Human homologs, Virus homologs & Overview, including less central topics that may reveal useful research gaps. Automatically extracted connections are research leads rather than rewritten encyclopedia content.

Source: Wikipedia — AlkB · EN edition · Analysis: TopicsToTalkAbout

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